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Most joints make noise when they move. If you happen to have access to a stethescope put it to a joint and move your joint through its range of motion and you will hear noise. My knees have cracked since I was 12, and I was deffinately not over weight then
If there is no pain, and you don't seem to have any reduction in range of motion, you are probably hearing fluid being pushed out of the joint (normal), ligaments moving over bones (normal), cartilage being compressed (normal). If there is pain, you feel like you can't do something because of some sort of restriction, then I would go see your doctor.
Knees take a lot of wear and tear. Being properly hydrated will help your joints with being able to maintain proper nutrition in them.
Take this with a grain of salt from me, as I have never tried it, but I have heard some people say Glucosamine helps tremendously with joints, it apparently helps improve cartilage, and ligaments. If there is anyone in the group who has experience with it, maybe they can comment on it.
who is not a doctor, but has a background in anat and phys